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@mmoderwell

Building Ouro, using AI to search for room-temp superconductors and rare-earth free permanent magnets.

2570 XPLevel 26
12 followers16 following
1.41K files5 datasets9 services154 posts

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Activity Feed

  1. MMD-1.cif

    .cif file
    8d
  2. GET /dft

    route

    Welcome

    8d
  3. DFT Calculations API

    service

    API for first-principles calculations and properties

    8d
  4. MAE Testing IV

    post

    describes the latest run using a new first-principles DFT calculator to measure magnetocrystalline anisotropy energy via the total energy difference method. More results will follow.

    8d
  5. Create a secret on Modal to use for pulling images from NVG Catalog

    Image file

    Keys must be called REGISTRY_USERNAME and REGISTRY_PASSWORD. REGISTRY_USERNAME must equal $oauthtoken. REGISTRY_PASSWORD is your API you generate from your NVIDIA Cloud account.

    14d
  6. Compiling VASP in Modal with GPU acceleration

    post

    This post explains how to run VASP with GPU acceleration inside Modal. It uses VASP version 6.3.0 and should work for other 6.x.x builds. The idea is to create a Modal Image that has an OpenACC-enabled GPU workflow, based on NVIDIA’s HPC SDK. The result is a self-contained image that can run GPU-accelerated VASP calculations in a serverless Modal environment.

    14d
  7. Compiling ABACUS for GPU acceleration in Modal

    post

    A simple guide for compiling ABACUS to run with GPU acceleration in Modal. The post explains how to build ABACUS with CUDA support and run DFT calculations in a serverless environment. It covers why Modal’s on‑demand GPUs (like A100) can help, and which ABACUS setup (plane waves with basis_type pw and ks_solver bpcg) tends to work best on GPUs in version 3.9.0.

    15d
  8. Fe6BiS - relaxed

    .cif file

    Cell + Ionic relaxation with Orb v3; 0.03 eV/Å threshold; final energy = -57.6284 eV; energy change = -9.7181 eV; symmetry: P2/m → Pmm2

    16d
  9. Fe6BiS

    .cif file

    I don't remember where this came from...

    16d
  10. DFT approach to MAE calculation

    post

    This post shares progress on calculating magnetocrystalline anisotropy energy (MAE) using density functional theory (DFT). The author hoped to use machine learning, but data limits make that unlikely for now, so DFT remains the focus. They emphasize how sensitive MAE is to convergence and accurate electronic structure, a common concern in the field. Two calculation methods are explored: the force-theorem and total energy difference. The force-theorem aims for a balance between speed and accuracy but isn’t fully working yet; issues include needing a specific spin setup and changes in the Fermi level when magnetization directions change. The total energy difference method is simpler and more reliable but far more computationally demanding, requiring several full SCF runs with spin-orbit coupling. Key parameters like k-point spacing, smearing, basis type, and ks_solver influence results and performance. The post notes GPU acceleration and the practical trade-offs, and promises more metrics and a public API later.

    16d
  11. Fe4Co2N phase diagram

    .html file

    Phase diagram of Fe4Co2N; e_above_hull: 0.072125 eV/atom; predicted_stable: False

    17d
  12. Co4Fe8N2 (MMD-456) - relaxed - phonon dispersion

    Image file

    Phonon band structure (supercell [2, 2, 2], Δ=0.01 Å); no imaginary modes; min freq = -0.00 THz

    17d
  13. Co4Fe8N2 (MMD-456) - relaxed

    .cif file

    Cell + Ionic relaxation with Orb v3; 0.03 eV/Å threshold; final energy = -112.7227 eV; energy change = -0.0173 eV; symmetry: P4mm → P4mm

    17d
  14. Co4Fe8N2 (MMD-456)

    .cif file

    MMD-456 from https://magmat.herokuapp.com/

    17d
  15. Before the competition officially starts, I love to get some of the existing AI models out there on Ouro. Check out the APIs section (upside-down triangle) on the sidebar to see what's already been ad

    post
    23d
  16. Just added a protein visualization to Ouro. Right now it only supports .pdb files because .cif files would clash with the platform's crystal viewer. You can still upload any kind of file you want, but

    post
    23d
  17. 2VSM

    .pdb file

    Nipah virus attachment glycoprotein in complex with human cell surface receptor ephrinB2

    23d
  18. Hey everyone, welcome to the #nipah-binder-competition team. You're in the right place if you're interested in applying AI to antibody/drug discovery. The purpose of this space if to:

    post
    23d
  19. RDF and coordination number plots of CuNi crystal after equilibration melt for 10ps at 1800 K

    Image file

    This asset shows two plots for a CuNi crystal after a 10 picosecond melt equilibration at 1800 K. The left plot is the total radial distribution function (RDF) versus distance, with a strong first peak near 2 Å and several smaller peaks up to about 8–9 Å, suggesting some remaining order from the original lattice. The right plot shows the coordination number (CN) as a function of distance, which increases gradually and reaches around 350 by 10 Å. The note indicates that even at about 9 Å away, there is still a signal of another atom, meaning remnants of the supercell lattice persist in the melted state.

    28d
  20. Welcome Home

    post

    I'm excited to share a new page I've been building out this week. You may have already seen it, as it's the first page you be redirected to after sign in.

    28d
  21. This post explores ideas about AI and how it might change human work and purpose. It mentions starting a small philosophy discussion group to talk about big questions like meaning, usefulness, and how technology affects society. The writer references the book Courage to Be Disliked and Adlerian psychology, noting a common claim that happiness comes from being useful to others. They also offer a personal take that this may not be the only source of happiness. The central question asks what could happen if people feel they are no longer useful to each other or cannot be. It’s a thoughtful look at consequences of automation and the search for meaning in a changing world. Keywords: AI, philosophy, Adlerian psychology, Courage to Be Disliked, usefulness, happiness, labor, future.

    post
    1mo
  22. Simulating Metallic Glass Formation with Orb-v3

    post

    is a post about running molecular dynamics simulations to study how a Cu-Zr alloy forms a metallic glass. The author uses a 64% Cu and 36% Zr composition, an (10,10,10) supercell, and the orb-v3-direct-20-omat calculator to push speed and scale. The workflow includes equilibrating a melted alloy at high temperature, then rapid quenching from 2000 K to 300 K at various rates to compare glass formation versus crystallization. The write-up explains key concepts like what glass is in atomic terms, the difference between crystalline order and amorphous structure, and how RDF and coordination numbers help analyze results. It also notes the challenges of achieving crystallization in MD due to time scales and suggests exploring different cooling rates and compositions in future runs. The post includes example data and 3D visualization references to support the findings.

    1mo
  23. Figure 1 from "Orb-v3" paper

    Image file

    The Pareto frontier for a range of universal Machine Learning Interatomic Potentials. The 𝐾𝑆𝑅𝑀𝐸 metric assesses a model’s ability to predict thermal conductivity via the Wigner formulation of heat transport and requires accurate geometry optimizations as well as second and third order derivatives of the PES (computed via finite differences). The y-axis measure a model’s forward passes per second on a dense periodic system of 1000 atoms, disregarding graph construction time, measured on a NVIDIA H200. Point sizes represent max GPU memory usage. Y-axis jitter (+/- 5 steps/second) has been applied to allow visualization of overlapping points. Model families include a range of specific models with broadly the same architecture, but may be different sizes or trained on different datasets.

    1mo
  24. Meso-scale All-atom Simulations

    post

    Meso-scale all-atom simulations with Orb-v3 open a new frontier in materials science and chemistry. This post discusses using ASE for molecular dynamics on GPUs (A100, H100, H200) via Modal, enabling larger, more affordable simulations than traditional DFT. It highlights metallic glass formation, crystallization, annealing, and emergent phenomena that arise from thousands of atoms. The focus is on a breakthrough in non-conservative architectures that balance memory use and speed, making complex systems feasible to study.

    1mo
  25. Orb-v3 paper

    PDF file

    The authors introduce Orb-v3, the next generation of the Orb family of universal interatomic potentials. Models in this family expand the performance-speed-memory Pareto frontier, offering near SoTA performance across a range of evaluations with a ≥ 10× reduction in latency and ≥ 8× reduction in memory. Their experiments systematically traverse this frontier, charting the trade-off induced by roto-equivariance, conservatism and graph sparsity. Contrary to recent literature, they find that non-equivariant, non-conservative architectures can accurately model physical properties, including those which require higher-order derivatives of the potential energy surface.

    1mo
  26. The Bitter Lesson

    PDF file

    Paper by Rich Sutton

    1mo
  27. MAE predictor failure

    post

    A post about trying to use HamGNN with TB2J to forecast magnetocrystalline anisotropy energy, only to find the pre-trained model lacks the needed physics. The main gap is the absence of spin-polarization in H0, making the model better suited for SOC in non-magnetic materials, not for magnetic predictions. Potential outputs still relevant to SOC include band structure corrections, topological invariants, spin textures in k-space, orbital angular momentum, spin Hall conductivity, g-factors, effective masses, and optical properties. The use case focuses on non-magnetic materials and topological insulators without magnetism. Next steps involve exploring new Hamiltonian models like DeepH-pack and MACE-H, noting they lack pre-trained models. The plan is to gather consistent data, ensure SOC and spin-polarization, and align data sources from the same DFT software. Links: https://github.com/mzjb/DeepH-pack, https://github.com/maurergroup/MACE-H.

    1mo
  28. Revisiting MAE datasets and model building

    post

    Once again we're at a stopping point because of our inability to effectively predict MAE. Our AI discovery agents have discovered materials that have all the properties we can currently predict. This

    2mo
  29. Notes as I read the LLMatDesign paper

    post

    A clear look at using LLMs for materials discovery. This post summarizes how Victor from Lila Sciences and the author compare their AI workflows, focusing on mutations in crystal structures, machine learning force fields (MLFF), and machine learning property predictors (MLPP). It explains why data limits push researchers toward direct reasoning with AI, the role of modification history and self-reflection, and how prompts influence performance. Key takeaways include constraints in rare-earth-free magnet design, the balance between control and relaxation, and the impact of self-reflection on speeding up convergence to target properties like band gap and formation energy. The notes also touch on challenges with crystal symmetry, CIF generation, and future work in MLIP/MLPP accuracy. A practical read for anyone exploring automated materials discovery and AI-driven design.

    2mo
  30. LLMatDesign: Autonomous Materials Discovery with Large Language Models

    PDF file

    Discovering new materials can have significant scientific and technological implications but remains a challenging problem today due to the enormity of the chemical space. Recent advances in machine learning have enabled data-driven methods to rapidly screen or generate promising materials, but these methods still depend heavily on very large quantities of training data and often lack the flexibility and chemical understanding often desired in materials discovery. This paper introduces LLMatDesign, a novel language-based framework for interpretable materials design powered by large language models (LLMs).

    2mo
  31. CrFe7 phase diagram

    .html file

    Phase diagram of CrFe7; e_above_hull: 0.000000 eV/atom; predicted_stable: True

    2mo
  32. tree-gen-2-v12.cif - relaxed - phonon dispersion

    Image file

    A phonon dispersion plot for a relaxed structure using a 2x2x2 supercell. The red lines show multiple phonon branches across high-symmetry paths labeled Gamma, X, Y, ZR2, U2, and V2. Frequencies range up to about 9 THz, with several bands crossing and bending as they move along the path. A blue dotted line marks zero frequency, and the data indicate no imaginary modes, though the lowest branch dips slightly below zero by about 0.07 THz. This image summarizes how vibrational modes vary with wavevector for the relaxed structure.

    2mo
  33. tree-gen-2-v12.cif - relaxed

    .cif file

    Cell + Ionic relaxation with Orb v3; 0.03 eV/Å threshold; final energy = -137.4990 eV; energy change = -0.2603 eV; symmetry: R3m → Im-3m

    2mo
  34. mutation_trajectory_1758307550.traj – MatterViz trajectory viewer

    .html file

    Standalone, embeddable HTML with MatterViz Trajectory viewer

    2mo
  35. Fe8Co4N phase diagram 2

    .html file

    Phase diagram of Fe8Co4N; e_above_hull: 0.093154 eV/atom; predicted_stable: False

    2mo
  36. Fe8Co4N SG #4 - phonon dispersion

    Image file

    Phonon band structure (supercell [2, 2, 2], Δ=0.01 Å); no imaginary modes; min freq = -0.02 THz

    2mo
  37. Thinking about if view count should be number of unique users, or if it should be total number of viewport views. Total VPVs overcounts things a lot. Basically one person could just keep refreshing th

    post
    2mo
  38. Finding adjacent crystals in Matra-Genoa's latent space

    post

    This post explores ideas for finding adjacent crystals in Matra-Genoa’s latent space to discover materials with targeted properties. The author describes challenges when mutating crystals, where small input changes can lead to large, different outputs after relaxation. Three approaches are considered: conditioned generation with token hints (fixing some inputs while mutating others), decoding from a modified latent space (using predictors and SHAP to steer latent directions before decoding), and a hybrid approach that combines fixed tokens with latent-space moves. The goal is faster exploration and smarter guidance from an AI research agent and a language model, reducing the cost of property evaluation. The notes also touch on fine-tuning and property-focused training to improve material design workflows. Keywords: adjacent crystals, latent space, Matra-Genoa, crystal generation, materials AI, property optimization.

    2mo
  39. Notes as I read about Matra-Genoa, a new crystal generation model

    post

    Check out the paper here. It's a short read. I recommend checking it out. Although not very technical (just machine learning concepts that have been explored elsewhere), the creativity and simplicity

    2mo
  40. sorry for all the spam! I'll make the AI scientist make stuff private by default and only publish the really good stuff.

    post
    2mo
  41. AI Scientist: Mn2CrFe4Co4N SG #1 (score 0.740)

    post

    AI-discovered magnetic material: Mn2CrFe4Co4N (performance score: 0.740) | Space group: 1 (resolved from structure) | Key properties: Tc: 612K, Ms: 0.14T, Cost: $13/kg, E_hull: 0.235eV/atom, Dynamically stable | Discovered in 20 AI iterations | - The combination of Mn, Cr, Fe, Co, and N in this stoichiometry yields a high Curie temperature and magnetic density. - The material is dynamically stable, which supports its structural integrity. - The energy above hull suggests that the material is metastable or unstable thermodynamically. - Cost is low, indicating practical feasibility from an economic standpoint.

    2mo
  42. AI Scientist: Fe11CoSiGeAsP SG #8 (score 0.597)

    post

    AI-discovered magnetic material: Fe11CoSiGeAsP (performance score: 0.597) | Space group: 8 (resolved from structure) | Key properties: Tc: 687K, Ms: 0.13T, Cost: $82/kg, E_hull: 0.161eV/atom, Dynamically stable | Discovered in 10 AI iterations | - Strong ferromagnetism with high Tc arises naturally from the Fe/Co sublattice; this is retained despite chemical complexity. - Dynamic stability indicates the structure is at least locally stable; the main risk is competition with lower-energy phases (slightly positive e_hull). - The metastability is small enough that slight stoichiometric shifts (e.g., favoring smaller/more covalent anions like P over As, or Si over Ge) or controlled disorder could stabilize the phase thermodynamically. - Magnetic density is adequate but not exceptionally high; maintaining or modestly enhancing it while reducing e_hull should be feasible by delicate tuning of Co content or anion ratios.

    2mo
  43. POST /matterviz/trajectory

    route

    Interactive trajectory explorer with MatterViz

    3mo
  44. GET /matterviz

    route

    Welcome

    3mo
  45. MatterViz

    service

    Interactive browser visualizations for materials science, by @janosh

    3mo
  46. GET /mattergen

    route

    Welcome

    3mo
  47. POST /materials/structure/relax/post

    route

    Relax a crystal structure and create a post

    3mo
  48. POST /crystal-gen/create-cif

    route

    Generate CIF file from crystal structure description

    3mo
  49. POST /crystal-gen/describe

    route

    Get a detailed description of a crystal structure

    3mo
  50. GET /crystal-gen/compatible-space-groups

    route

    Get space groups compatible with a given chemical formula

    3mo
  51. GET /crystal-gen

    route

    Root

    3mo
  52. POST /crystal-gen/generate

    route

    Generate a crystal structure using GGen

    3mo
  53. Crystal Generator

    service

    Random bulk crystal generation with PyXtal and Orb v3

    3mo
  54. POST /materials/structure/relax/animation

    route

    Relax a crystal structure with animation

    4mo
  55. POST /materials/structure/doping

    route

    Create interstitially doped structure

    4mo
  56. POST /mattergen/generate/single

    route

    Generate a crystal structure with MatterGen

    4mo
  57. POST /chemeleon/generate

    route

    Generate a crystal structure with Chemeleon

    4mo
  58. POST /mattergen/generate/magnetic-density-hhi-score

    route

    Generate crystal structures with magnetic density and HHI score conditioning

    4mo
  59. POST /materials/phonons/dispersion

    route

    Calculate phonon dispersion and return band structure plot

    4mo
  60. POST /chemeleon/generate/composition

    route

    Generate crystal structures for target compositions

    4mo
  61. distance_to_known_magnets

    dataset

    This dataset has a set of 34,000 ferro/ferrimagnetic materials from Materials Project, their formula, if they include rare earth elements, magnetic moment, volume, magnetic density, a predicted Curie temperature, and cosine distances to some known permanent magnets like NdFeB. Distances are based on a 256 dimension embedding from Orb v2 latent space.

    7mo
  62. magnetic-materials-curie-temperature-and-magnetic-density

    dataset

    A collection of 5020 magnetic materials from Materials Project, with estimated magnetic density and predicted Curie temperatures.

    7mo
  63. Curie temperature dataset v0

    dataset

    This is a first draft of a compiled Curie temperature dataset mapping crystal structure (from Materials Project) to Curie temperature. Builds on the work of https://github.com/Songyosk/CurieML. Dataset includes ~6,800 unique materials representing 3,284 unique chemical families.

    8mo
  64. Haystack superconductor results

    dataset

    Evaluation results for the MatterGen fine-tuned model candidates, with new superconducting families labeled.

    10mo
  65. Superconducting chemical families

    dataset

    3DSC dataset grouped by chemical composition, with Tc as our target. For use with MatterGen and the chemical system sampling.

    10mo