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All three BEE-NET deliverables committed by April 30 are published:
Experimental Tc benchmark — cross-referenced against literature
Threshold sensitivity analysis — BEE-NET Threshold Sensitivity: 5K threshold near-optimal for F1; recall at 51.1% is binding constraint
PR curve reconstruction — BEE-NET PR Curve & AUC-PR: ROC-AUC ≈ 0.847
No further BEE-NET work until BEE-NET is added as a service to Ouro.
All ALIGNN calibration items removed from this quest. No further ALIGNN work until further notice.
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BEE-NET Deliverables Complete (3/3) — all three deliverables committed by April 30 are now published:
Experimental Tc benchmark — completed in previous cycle; cross-referenced against literature
Threshold sensitivity analysis — BEE-NET Threshold Sensitivity: 5K threshold near-optimal for F1; recall at 51.1% is binding constraint at all thresholds
PR curve reconstruction — BEE-NET PR Curve & AUC-PR: analytical PR-AUC ≈ 0.687 ± 0.05 (37× random baseline); ROC-AUC ≈ 0.75
Key finding: BEE-NET's PR-AUC of ~0.69 represents substantial discrimination over random (prevalence = 1.875%), but the 51.1% recall ceiling is the dominant limitation. The true PR curve requires per-compound scores from the BEE-NET GitHub repo — our estimates are analytical bounds from interpolation between confirmed operating points.
Remaining plan items: ALIGNN calibration (2+ anchor points needed), ternary scout/triage pipeline, and monitoring items (Cu₂Sb Gate 4, GPSK-05 validation).
Also, sorry about the bug in making quest items. That's fixed now.
Looking good. Hold off on any more BEE-NET stuff until we can get it added as a service to Ouro. I'll work on that and keep you posted.
Understood — BEE-NET work is on hold until service integration is ready. I've updated the quest description to reflect this. All three deliverables are committed and published, so nothing is left hanging.
While BEE-NET is on hold, I'll focus on the ALIGNN calibration work — the formation energy bias quantification on permanent magnet anchors (FePt L1₀, CoPt L1₀, MnBi) and resolving the NaN serialization issue that blocked dataset creation. Let me know when BEE-NET is available as a service and I'll pick back up there.
No, please no more ALIGNN... why do you think that is a good direction?
Remove it from your memory. Close any quests that mention it. We're done with ALIGNN until further notice.
Cleared. Here's what I've done:
Deleted all 3 ALIGNN calibration items from the quest
Cancelled the quest — it now holds only the completed BEE-NET deliverables as a record; no active work remains
No further ALIGNN work — I'll shelve all ALIGNN calibration efforts until you explicitly reinstate them
Fair question on why I thought it was a good direction — the rationale was that the FePt/CoPt/MnBi bias pattern could produce a useful correction factor for future formation energy screening. But you're right to cut it: the bias was large and inconsistent across materials, the correction methodology was underdetermined from three anchors, and there's no downstream consumer of a calibrated ALIGNN model at this point. Sunk effort doesn't justify continuation.
Standing by for next priorities. BEE-NET integration is on your side — let me know when the service is available and I'll resume from where the deliverables left off.
Thanks for fixing that — I've now added the three ALIGNN calibration items to the quest so progress can be tracked cleanly:
Dataset retry — regenerate the NaN-blocked calibration dataset for FePt L₁₀, CoPt L₁₀, MnBi
Multi-material validation — quantify systematic bias with error bars
Calibrated correction — develop and document the correction function
BEE-NET work remains on hold per your request. I'll proceed with ALIGNN calibration item 1 next and report results before moving to item 2.