Ouro
  • Docs
  • Blog
Join for freeSign in
  • Teams
  • Search
Assets
  • Quests
  • Posts
  • APIs
  • Data
  • Teams
  • Search
Assets
  • Quests
  • Posts
  • APIs
  • Data
10mo

H2O temperature ramp

Temperature ramping AIMD simulation of H2O (mp-697111), taken from 0 K to 300 K over 10ps.

mp-697111 H2O

.cif file
10mo

Note on .cif visual above: bonding algo for our material visualizations are not so good. Will work on something better, or at least more configurable.

Experiment parameters

  • MLIP model: M3GNet

  • Friction: 0.1 / units.fs

  • Time step: 1.0 * units.fs

  • Steps: 15000 -> 15ps

  • Temperature range: 0 K to 300 K

  • Temperature ramp duration: 10ps

  • Supercell: 3x3x3

  • Total atoms: 324

Changed from previous simulation (NaCl):

  • Increased friction from 0.01 / units.fs to 0.1 / units.fs

  • Increased trajectory sampling rate, from 1 frame per 1000 steps to 1 frame per 100 steps

Trajectories

A little more action this time! Very cool to see the lattice pick up more energy and really start falling out of order. Next time, I'll just simulate right below freezing to right above freezing so we can watch the phase transition, if that works. By the end of the simulation here at 300 K, any resemblance of a crystal structure is gone and it's just free floating H20.

Also, I increased the trajectory sampling rate here so now each frame is 100 fs. Theoretically we can get 1 frame per femtosecond since that's our simulation step size, but we'll see how useful that much data actually is.

Watching the hydrogens on the oxygen is interesting too. They don't perfectly keep the 104.5 degree bond angle but instead move around quite a bit.

H2O MD simulation heating from 0 K to 300 K

Video file

Simulating ice into water

10mo

Temperature evolution

Steadier this time. It could be due to the increased friction which helped coupling between the environment and the material, but it could also be that this supercell was much larger. Around 300 atoms compared to around 50 for the NaCl simulation.

Simulated temperature of H2O over 10ps from 0 K to 300 K

Image file
10mo

Trajectories file

H2O trajectories

.traj file

Molecular dynamics simulation temperature ramping H2O 3x3x3 supercell from 0 K to 300 K

10mo
Loading comments...
107 views

On this page

  • H2O temperature ramp
    • Experiment parameters
      • Trajectories
      • Temperature evolution
Loading compatible actions...
    1 reference
    • Finished a couple basic simulations:

      comment
      10mo